journal_articles.bib

@preamble{{\newcommand{\noopsort}[1]{} } # {\newcommand{\singleletter}[1]{#1} }}
@comment{{\nooopsort command is a trick to sort in reverse chronilogical
          order counting backwards from zzzz,zzzy,zzzx,etc
          http://newton.ex.ac.uk/tex/pack/bibtex/btxdoc/node3.html }}
@article{fahrenholtz2017theoretical,
  title = {{Theoretical model for laser ablation outcome predictions in brain: calibration and validation on clinical MR thermometry images}},
  author = {{{\noopsort{zzyx}}Fahrenholtz, Samuel John and Madankan, Reza and Danish, Shabbar and Hazle, John D and Stafford, R Jason and {\bf Fuentes, David}}},
  journal = {{International Journal of Hyperthermia}},
  pages = {{1--11}},
  year = {{2017}},
  publisher = {{Taylor \& Francis}}
}
@article{melancon2017development,
  title = {{Development of an Electroporation and Nanoparticle-based Therapeutic Platform for Bone Metastases}},
  author = {{{\noopsort{zzyy}}Melancon, Marites P and Appleton Figueira, Tomas and {\bf Fuentes, David} and Tian, Li and Qiao, Yang and Gu, Jianhua and Gagea, Mihai and Ensor, Joe E and Mu{\~n}oz, Nina M and Maldonado, Kiersten L and A.~Tam}},
  journal = {{Radiology}},
  pages = {161721},
  year = {2017},
  publisher = {Radiological Society of North America}
}
@article{yung15,
  author = {{\noopsort{zzyz}}J.~Yung and {\bf D.~Fuentes} and C.~J.~MacLellan and F.~Maier and J.~D.~Hazle and R.~J.~Stafford},
  title = {{Referenceless Magnetic Resonance Temperature Imaging using Gaussian Process Modeling}},
  journal = {{Medical Physics}},
  year = {2017},
  publisher = {Wiley Online Library}
}
@article{vivek2017volume,
  journal = {{Journal of Neuro-Oncology}},
  title = {{Volumetric Response of Progressing Post-SRS Lesions Treated with Laser Interstitial Thermal Therapy}},
  author = {{V.~Beechar and S.~Prabhu and D.~Bastos and J.~Weinberg and RJ~Stafford and {\bf D.~Fuentes} and K.~Hess and G.~Rao}},
  year = {2017},
  pages = {1--9},
  publisher = {Springer}
}
@article{sovizi16,
  author = {{{\noopsort{zzyp}} Sovizi, Javad and Mathieu, Kelsey B and Thrower, Sara L and Stefan, Wolfgang and Hazle, John D and {\bf Fuentes, David}}},
  title = {{Gaussian Process Classification of Superparamagnetic Relaxometry Data: Phantom Study}},
  journal = {Artificial Intelligence in Medicine},
  year = {2017},
  pages = {1--12},
  publisher = {Elsevier}
}
@article{MacLellan16,
  author = {{\noopsort{zzyn}}C.~J.~MacLellan   and {\bf D.~Fuentes} and S.~Prabhu and G.~Rao and J.~Weinberg and J.~D.~Hazle and R.~J.~Stafford },
  title = {{A methodology for thermal dose model parameter development using perioperative MRI}},
  journal = {International Journal of Hyperthermia},
  pages = {1--10},
  year = {2017},
  publisher = {Taylor \& Francis}
}
@article{mitcham2017photoacoustic,
  title = {Photoacoustic-based SO2 estimation through excised bovine prostate tissue with interstitial light delivery},
  author = {{\noopsort{zzyr}}Mitcham, Trevor and Taghavi, Houra and Long, James and Wood, Cayla and {\bf Fuentes, David} and Stefan, Wolfgang and Ward, John and Bouchard, Richard},
  journal = {Photoacoustics},
  volume = {7},
  pages = {47--56},
  year = {2017},
  publisher = {Elsevier}
}
@article{Lin16,
  author = {{\noopsort{zzyr}}J.~Lin and {\bf D.~Fuentes} and J.~Weinberg and S.~Prabhu and V.~Baladandayuthapani and J.~D.~Hazle and D.~Schellingerhout},
  title = {{Performance Assessment for Brain Magnetic Resonance Imaging Registration Methods}},
  journal = {American Journal of Neuroradiology},
  volume = {38},
  number = {5},
  pages = {973--980},
  year = {2017},
  publisher = {Am Soc Neuroradiology}
}
@article{Madankan15,
  author = {{\noopsort{zzyr}}R.~Madankan and W.~Stefan and J.~D.~Hazle and R.~J.~Stafford and {\bf D.~Fuentes}},
  title = {{Accelerated Model-based Signal Reconstruction for Magnetic Resonance Imaging in Presence of Uncertainties}},
  journal = {Physics in medicine and biology},
  volume = {62},
  number = {1},
  pages = {214},
  year = {2016},
  publisher = {IOP Publishing}
}
@article{tam2016irreversible,
  title = {{Irreversible Electroporation in the Epidural Space of the Porcine Spine: Effects on Adjacent Structures}},
  author = {{\noopsort{zzys}Tam, Alda L and Figueira, Tomas A and Gagea, Mihai and Ensor, Joe E and Dixon, Katherine and McWatters, Amanda and Gupta, Sanjay and {\bf Fuentes, David}}},
  journal = {Radiology},
  pages = {152688},
  year = {2016},
  publisher = {Radiological Society of North America}
}
@article{oden2015toward,
  title = {Toward Predictive Multiscale Modeling of Vascular Tumor Growth},
  author = {{\noopsort{zzyt}}Oden, J Tinsley and Lima, Ernesto ABF and
Almeida, Regina C and Feng, Yusheng and Rylander, Marissa Nichole and
{\bf D.~Fuentes} and Faghihi, Danial and Rahman, Mohammad M and DeWitt,
Matthew and Gadde, Manasa },
  journal = {Archives of Computational Methods in
Engineering},
  pages = {1--45},
  year = {2015},
  publisher = {Springer}
}
@article{Bankson15,
  title = {Kinetic modeling and constrained reconstruction of hyperpolarized 1-13C-pyruvate offers improved metabolic imaging of tumors},
  author = {{\noopsort{zzyu}}Bankson, James A and Walker, Christopher M and
Ramirez, Marc S and Stefan, Wolfgang and {\bf D.~Fuentes} and Merritt, Matthew E and Lee, Jaehyuk and Sandulache, Vlad C and Chen, Yunyun and Phan, Liem and others},
  journal = {Cancer research},
  pages = {canres--0171},
  year = {2015},
  publisher = {AACR}
}
@article{Fahrenholtz15,
  author = {{\noopsort{zzyy}}S.~Fahrenholtz and T.~Moon and M.~Franco and D.~Medina and J.~D.~Hazle and R.~J.~Stafford and F.~Maier and S.~Danish and A.~Gowda and A.~Shetty and T.~Warburton and {\bf D.~Fuentes} },
  title = {{A Model Evaluation Study for Treatment Planning of Laser Induced Thermal Therapy.}},
  journal = {International Journal of Hyperthermia},
  volume = {31},
  number = {7},
  pages = {705--714},
  year = {2015},
  publisher = {Taylor \& Francis}
}
@article{Fuentes2014,
  author = {{\noopsort{zzzb}}{\bf D.~Fuentes} and J.~Contreras and J.~Yu and R.~He and E.~Castillo and R.~Castillo and T.~Guerrero},
  doi = {10.1007/s11548-014-1128-3},
  isbn = {1154801411},
  issn = {1861-6410},
  journal = {International Journal of Computer Assisted Radiology and Surgery},
  pages = {393--401},
  title = {{Morphometry-based measurements of the structural response to whole-brain radiation}},
  url = {http://link.springer.com/10.1007/s11548-014-1128-3},
  volume = {10},
  year = {2014}
}
@article{maier14,
  author = {{\noopsort{zzzc}}F. Maier and {\bf D.~Fuentes} and J.~S.~Weinberg and J.~Hazle and R.~J.~Stafford},
  title = {{Robust Phase Unwrapping using a Sorted List, Multi-clustering Algorithm}},
  journal = {Magnetic Resonance in Medicine},
  volume = {73},
  number = {4},
  issn = {1522-2594},
  url = {http://dx.doi.org/10.1002/mrm.25279},
  doi = {10.1002/mrm.25279},
  pages = {1662--1668},
  year = {2015}
}
@article{castillo2014computing,
  title = {Computing global minimizers to a constrained B-spline image registration problem from optimal l1 perturbations to block match data},
  author = {{\noopsort{zzzd}}Castillo, Edward and Castillo, Richard and {\bf
D.~Fuentes} and Guerrero, Thomas},
  journal = {Medical physics},
  volume = {41},
  number = {4},
  pages = {041904},
  year = {2014},
  publisher = {American Association of Physicists in Medicine}
}
@article{maclellan2013estimating,
  title = {Estimating nanoparticle optical absorption with magnetic resonance temperature imaging and bioheat transfer simulation},
  author = {{\noopsort{zzze}}MacLellan, Christopher J and {\bf D.~Fuentes} and Elliott, Andrew M and Schwartz, Jon and Hazle, John D and Stafford, R Jason},
  journal = {International Journal of Hyperthermia},
  volume = {30},
  number = {1},
  pages = {47--55},
  year = {2013},
  publisher = {Informa UK Ltd. London}
}
@inbook{fuentesoden2013,
  editor = {F.~Darema},
  author = {{\noopsort{zzzf}}{\bf D.~Fuentes} and Oden, JT and Diller, KR and Yung, J and Feng, Y and Hazle, JD and Shetty, A and Stafford, RJ},
  chapter = {{Computational and MR-guided Patient-Specific Laser Induced Thermal Therapy of Cancer}},
  title = {{Dynamic Data Driven Application Systems}},
  note = {{accepted}},
  publisher = {{Springer }},
  year = {2013}
}
@article{yeniaras12,
  author = {{\noopsort{zzzg}}Yeniaras, E. and {\bf D.~Fuentes} and Fahrenholtz, S.J. and Weinberg, J.S. and Maier, F. and Hazle, J.D. and Stafford, R.J.},
  year = {2013},
  issn = {1861-6410},
  journal = {International Journal of Computer Assisted Radiology and Surgery},
  doi = {10.1007/s11548-013-0948-x},
  title = {{Design and initial evaluation of a treatment planning software system for MRI-guided laser ablation in the brain}},
  url = {http://dx.doi.org/10.1007/s11548-013-0948-x},
  publisher = {Springer Berlin Heidelberg},
  pages = {1-9},
  url = {http://link.springer.com/article/10.1007/s11548-013-0948-x}
}
@article{fahrenholtz2013generalised,
  author = {{\noopsort{zzzh}}S.~Fahrenholtz and R.~J.~Stafford and J.~Hazle and {\bf D.~Fuentes}},
  title = {{Generalised polynomial chaos-based uncertainty quantification for planning MRgLITT procedures}},
  journal = {International Journal of Hyperthermia},
  volume = {29},
  number = {4},
  pages = {324--335},
  year = {2013},
  publisher = {Informa UK Ltd. London},
  note = {PMC3924420},
  url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3924420/}
}
@article{castilloetal13a,
  author = {{\noopsort{zzzi}}R. Castillo and E. Castillo and {\bf D.~Fuentes} and M. Ahmad and A. M Wood and M. S. Ludwig and T. Guerrero},
  title = {{A Reference Dataset for Deformable Image Registration Spatial Accuracy Evaluation using the COPDgene Study Archive}},
  journal = {Physics in Medicine and Biology},
  volume = {58},
  number = {9},
  pages = {2861},
  year = {2013},
  note = {PMC3677192}
}
@article{fuentesetal12a,
  author = {{\noopsort{zzzj}}{\bf D.~Fuentes} and A. Elliott and J.~S.~Weinberg and A.~Shetty and J.~D.~Hazle and R.~J.~Stafford},
  title = {{An Inverse Problem Approach to Recovery of In-Vivo Nanoparticle Concentrations from 
Thermal Image Monitoring of MR-Guided Laser Induced Thermal Therapy}},
  volume = {41},
  number = {1},
  pages = {100--111},
  year = {2013},
  journal = {{Ann. BME.}},
  note = {PMC3524364},
  url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3524364/}
}
@article{fengfuentes11b,
  author = {{\noopsort{zzzk}}Y.~Feng and {\bf D. Fuentes}},
  journal = {{Inter. Journal Hyperthermia}},
  note = {invited review. PMC3930104},
  title = {{Model-Based Planning and Real-Time Predictive Control for
          Laser-Induced Thermal Therapy}},
  volume = {27},
  number = {8},
  pages = {751--761},
  year = {2011},
  publisher = {Informa UK, Ltd. London}
}
@article{fuentesetal11a,
  author = {{\noopsort{zzzl}}{\bf D.~Fuentes} and J.~Yung and J.~D.~Hazle and J.~S.~Weinberg and R.~J.~Stafford},
  title = {{Kalman Filtered MR Temperature Imaging for Laser Induced Thermal Therapies}},
  journal = {{Trans. Medical Imaging}},
  volume = {31},
  number = {4},
  year = {2012},
  pages = {984--994},
  note = {Special Issue on Interventional Imaging, PMC3873725},
  url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873725}
}
@article{fengfuentes11a,
  author = {{\noopsort{zzzm}}Y.~Feng and {\bf D. Fuentes}},
  journal = {Signal Processing Magazine, IEEE},
  title = {{Real-Time Predictive Surgical Control for Cancer Treatment Using Laser Ablation
[Life Science]}},
  year = {2011},
  month = {May},
  volume = {28},
  number = {3},
  pages = {134 -138}
}
@article{fuentesetal10a,
  author = {{\noopsort{zzzn}}{\bf D.~Fuentes} and C.~Walker and A.~Elliott and A.~Shetty and J.~Hazle and R.~J.~Stafford},
  title = {{MR Temperature Imaging Validation of a Bioheat Transfer Model for LITT}},
  journal = {{International Journal of Hyperthermia}},
  volume = {27},
  number = {5},
  pages = {453-464},
  year = {2011},
  note = {Cover Page, PMC3930085 },
  doi = {10.3109/02656736.2011.557028}
}
@article{staffordetal10c,
  author = {{\noopsort{zzzp}}R.~J.~Stafford and {\bf D.~Fuentes} and  A.~Elliott and  K.~Ahrar},
  title = {{Laser Induced Thermal Therapy for Ablation}},
  journal = {{Crit. Rev. Biomed. Eng.}},
  year = {2010},
  volume = {38},
  number = {1},
  pages = {79-100}
}
@article{fuentesetal09,
  author = {{\noopsort{zzzq}}{\bf D.~Fuentes} and Y.~Feng and A.~Elliott and A.~Shetty and R.~J.~McNichols and J.~T.~Oden and R.~J.~Stafford},
  title = {{Adaptive Real-Time Bioheat Transfer Models for Computer Driven MR-guided Laser Induced Thermal Therapy}},
  journal = {{IEEE Trans. Biomed. Eng.}},
  year = {2010},
  volume = {57},
  number = {5},
  note = {Cover Page, PMC3857613},
  url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3857613/}
}
@article{fuentesetal09c,
  author = {{\noopsort{zzzr}}{\bf D.~Fuentes} and R.~Cardan and R.~J.~Stafford
and J.~Yung and G.~D.~Dodd~III and Y.~Feng},
  title = {{High Fidelity Computer Models for Prospective Treatment Planning of RF Ablation with {\em in vitro} Experimental Correlation}},
  journal = {{J. of Vascular and Interventional Radiology}},
  year = {2010},
  volume = {21},
  number = {11},
  pages = {1725-1732},
  note = {PMC2966506},
  url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2966506/}
}
@article{Fuentesetal08,
  author = {{\noopsort{zzzt}}{\bf D.~Fuentes} and J.~T.~Oden and K.~R.~Diller  and J.~Hazle and A.~Elliott and  and A.~Shetty and R.~J.~Stafford },
  title = {{Computational Modeling and Real-Time Control of Patient-Specific
           Laser Treatment Cancer}},
  journal = {{Ann. BME.}},
  year = {2009},
  number = {4},
  volume = {37},
  note = {PMC4064943},
  pages = {763},
  url = {http://www.springerlink.com/content/g413k3716q43412m}
}
@article{Fengetal08,
  author = {{\noopsort{zzzu}}Y.~Feng and {\bf D.~Fuentes} and A.~Hawkins 
            and J.~Bass and M.~N.~Rylander },
  title = {{Model-Based Optimization and Real-Time Control 
           for Laser Treatment of  Heterogeneous Soft Tissues}},
  journal = {{CMAME}},
  year = {2009},
  volume = {198},
  number = {21-26},
  pages = {1742-1750},
  note = {{Advances in Simulation-Based Engineering Sciences  Special Issue Honoring Prof. J. Tinsley Oden, PMC2871336}},
  url = {http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V29-4VBDJ79-2&_user=109095&_coverDate=05%2F01%2F2009&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_searchStrId=1519489662&_rerunOrigin=google&_acct=C000059728&_version=1&_urlVersion=0&_userid=109095&md5=db7bd51748aad34e8e31f7d81db395f5&searchtype=a}
}
@article{Fengetal07,
  author = {{\noopsort{zzzv}}Y.~Feng and {\bf D.~Fuentes} and A.~Hawkins and J.~Bass and M.~N.~Rylander and A.~Elliott and A.~Shetty and R.~J.~Stafford and J.~T.~Oden},
  title = {{Nanoshell-Mediated Laser Surgery Simulation for Prostate Cancer Treatment}},
  journal = {{Engineering with Computers}},
  doi = {10.1007/s00366-008-0109-y},
  year = {2009},
  volume = {25},
  number = {1},
  note = {PMC2905827},
  pages = {3-13}
}
@article{Odenetal08,
  author = {{\noopsort{zzzw}}J.~T.~Oden and {\bf D.~Fuentes} and J.~Bass and Y.~Feng},
  title = {{Dynamic-Data-Driven Systems Aid Patient-Specific Cancer Therapy}},
  journal = {spie.org},
  year = {2008},
  doi = {10.1117/2.1200810.1220}
}
@inbook{Dilleretal07,
  editor = {W.~J.~Minkowycz and E.~M.~Sparrow},
  author = {{\noopsort{zzzx}}K.~R.~Diller and J.~T.~Oden and C.~Bajaj
and J.~C.~Browne and J.~Hazle and I.~Babu\v{s}ka and J.~Bass and
L.~Bidaut and L.~Demkowicz and A.~Elliott and Y.~Feng and {\bf
D.~Fuentes} and S.~Goswami and A.~Hawkins and S.~Khoshnevis and B.~Kwon and S.~Prudhomme and R.~J.~Stafford },
  chapter = {{9: Computational Infrastructure for the Real-Time
            Patient-Specific Treatment of Cancer}},
  volume = {{3: Numerical Implementation of Bioheat Models and Equations}},
  title = {{Advances in Numerical Heat Transfer}},
  year = {2008},
  publisher = {{Taylor \& Francis Group}},
  url = {http://www.crcpress.com/product/isbn/9781420095210}
}
@article{Odenetal07,
  author = {{\noopsort{zzzy}}J.~T.~Oden and K.~R.~Diller and C.~Bajaj
and J.~C.~Browne and J.~Hazle and I.~Babu\v{s}ka and J.~Bass and
L.~Demkowicz and Y.~Feng and {\bf D.~Fuentes} and S.~Prudhomme and M.~N.~Rylander and R.~J.~Stafford and Y.~Zhang },
  title = {{Dynamic Data-Driven Finite Element Models for Laser Treatment of prostate cancer}},
  journal = {{Num. Meth. PDE}},
  year = {2007},
  volume = {23},
  number = {4},
  pages = {904-922},
  note = {PMC2850081},
  url = {http://onlinelibrary.wiley.com/doi/10.1002/num.20251/abstract}
}
@article{Fuentesetal06,
  author = {{\noopsort{zzzz}}{\bf D.~Fuentes} and D.~Littlefield and J.T.~Oden and S.~Prudhomme},
  title = {{Extensions of goal-oriented error estimation methods to simulations of highly-nonlinear response of shock-loaded elastomer-reinforced structures}},
  journal = {{Comput. Methods Appl. Mech. Engrg.}},
  year = {2006},
  volume = {195},
  pages = {4659-4680},
  url = {http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V29-4J555VV-1&_user=109095&_coverDate=07%2F15%2F2006&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_searchStrId=1519487821&_rerunOrigin=google&_acct=C000059728&_version=1&_urlVersion=0&_userid=109095&md5=57585032abd99350596405a0ba2e521f&searchtype=a}
}

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